Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs2803432 chr9:78939948 T/A 6.32E-5 285 25.62 28.22 7.27 KM Plot
KIRP rs28360499 chr6:27945396 G/A 2.01E-8 288 25.62 26.4 9.77 KM Plot
KIRP rs28379833 chr7:44077724 C/T 0 284 25.62 26.28 2.9 KM Plot
KIRP rs28381683 chr11:102737276 CTTTCCAT/C 8.72E-6 288 25.7 26.52 10.97 KM Plot
KIRP rs28381684 chr11:102737192 A/T 8.72E-6 288 25.7 26.52 10.97 KM Plot
KIRP rs28381690 chr11:102735847 G/GAT 8.72E-6 287 25.7 26.83 10.97 KM Plot
KIRP rs28382064 chr20:60585914 G/A 0.000154 276 25.5 30.9 10.47 KM Plot
KIRP rs28384495 chr10:74856576 C/G 1.12E-14 287 26.37 22.8 5.6 KM Plot
KIRP rs2838721 chr21:46287580 C/T 1.5E-6 284 26 24.73 20.8 KM Plot
KIRP rs28404288 chr7:53255446 A/G 9.25E-6 284 26.2 23.93 10.97 KM Plot
KIRP rs28405928 chr2:47128925 A/G 2.19E-7 289 25.37 34.43 10.97 KM Plot
KIRP rs28406192 chr16:961485 T/C 1.46E-5 276 26.57 24.67 15.53 KM Plot
KIRP rs28419341 chr22:40854456 G/T 4.59E-5 286 26.48 21.93 12.1 KM Plot
KIRP rs28423043 chr16:90107377 A/T 7.51E-9 285 24.73 35.32 10.7 KM Plot
KIRP rs28446305 chr4:37692943 T/C 4.82E-6 287 25.53 29.87 16.45 KM Plot